ngs_backbone Tool name | ngs_backbone |
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URL | http://bioinf.comav.upv.es/ngs_backbone/index.html |
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Important features | 1. It is capable of cleaning reads, de novo assembly or mapping against a reference and annotate SNPs, SSRs, ORFs.
2. Used in transcriptome analysis and sometimes in genome analysis. |
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Citations | |
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Year of publication | Not available |
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Rank by usage frequency | 100 |
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Comments | |
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Function | De novo assembler, SNP discovery |
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Category | Downloadable |
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License | AGPL |
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Status | |
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Input file format | FASTA, FASTQ |
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Output file format | BAM, VCF, GFF |
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Operating system | Unix,linux |
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Operating language | |
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Platform | Sanger, Illumina/Solexa, Roche 454 |
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Maintained by |
M. Hackenberg, G. Barturen and J.L. Oliver |
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Downloadable file format | |
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Submission file format | |
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